Next up, we'll set some paths in your bash profile so the OS knows where the EC2 tools are located. This is a different key from the one provided to us by Amazon. That was for using the EC2 tools and interacting with the instances in terms of creation and management. To actually SSH into an instance, a separate keypair is required as there are no passwords by default. Using the -a option will list all of the AMIs you have access to, and there are a lot.
Alternatively you can list just the images Amazon has:. In this case, it's amidd The instance is now being loaded with the AMI I selected and booting up. On the instance row, it will say something like pending pstam-keypair until it has fully booted up.
When an instance is ready to go, its URL and internal address will be supplied with the ec2din command below. If you try to access the URL in a browser, nothing will happen just yet as the firewall blocks all ports by default. To start using StarCluster , you should see their install instructions. Your StarCluster config file should look like this:.
After launching your cluster, we recommend that you connect as the ubuntu user. You can do this as follows:. This file should contain the following line:.
These steps described here are also covered in the QIIME EC2 video , though that video is now several years old so the AWS interface in the video may be different from what you see when you log in.
Getting started with the command line. Enter search terms or a module, class or function name. News and Announcements ». You should enter the following commands to start the IPython Notebook server: screen ipython notebook. Warning This is not a secure IPython Notebook server for several reasons. Figure 1: Initiating a new connection. Figure 2. Remote file browser. Figure 3. Drag and drop a local file to the EC2 instance. Figure 4. Transferred file is visible on the EC2 instance.
Figure 5. Create an output file on the EC2 instance. Figure 6. Transfer file from the EC2 instance to the local system. Get Trained And Certified.
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